# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "progeny" in publications use:'
type: software
license: Apache-2.0
title: 'progeny: Pathway RespOnsive GENes for activity inference from gene expression'
version: 1.27.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.progeny
abstract: PROGENy is resource that leverages a large compendium of publicly available
  signaling perturbation experiments to yield a common core of pathway responsive
  genes for human and mouse. These, coupled with any statistical method, can be used
  to infer pathway activities from bulk or single-cell transcriptomics.
authors:
- family-names: Schubert
  given-names: Michael
- family-names: Dugourd
  given-names: Aurélien
  email: aurelien.dugourd@bioquant.uni-heidelberg.de
preferred-citation:
  type: article
  title: Perturbation-response genes reveal signaling footprints in cancer gene expression
  authors:
  - family-names: Schubert
    given-names: Michael
  - family-names: Klinger
    given-names: Bertram
  - family-names: Klünemann
    given-names: Martina
  - family-names: Sieber
    given-names: Anja
  - family-names: Uhlitz
    given-names: Florian
  - family-names: Sauer
    given-names: Sascha
  - family-names: Garnett
    given-names: Mathew J
  - family-names: Blüthgen
    given-names: Nils
  - family-names: Saez-Rodriguez
    given-names: Julio
  journal: Nature communications
  year: '2018'
  volume: '9'
  issue: '20'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/saezlab/progeny
commit: 26fbffdfe93163069111a67e1c2212c1dff91d4e
url: https://github.com/saezlab/progeny
contact:
- family-names: Dugourd
  given-names: Aurélien
  email: aurelien.dugourd@bioquant.uni-heidelberg.de