Changes in version 2.37.1 o updated DESCRIPTION file to new format (Authors@R) Changes in version 2.31.1 o changed e-mail address of maintainer o updated README.md and formatting of package vignette o updated references in documentation Changes in version 2.21.1 o fix in plot() method Changes in version 2.1.3 o fix of citation info file o fix of inst/NEWS Changes in version 2.1.2 o version number bump for technical reasons related to Bioconductor build servers Changes in version 2.1.1 o version number bump for technical reasons related to Bioconductor build servers Changes in version 2.0.0 o updated models PrOCoilModel and PrOCoilModelBA that have been trained with newer data and up-to-date methods o general re-design of classes and functions to allow for multiple predictions per run; that comes along with a more streamlined and more versatile interface how to supply sequences and registers to predict(). o predictions and plots are now performed by the 'kebabs' package; this led to a major performance increase. o the integration of the 'kebabs' package also allowed for inheriting functions like heatmap() and accessors, such as, sequences(), baselines(), and profiles() o added a fitted() method to allow for easy extraction of predictions o addition of small example model file inst/examples/testModel.CCModel o streamlining/simplification of some man pages o several corrections and updates of man pages and package vignette o changed vignette building engine from Sweave to knitr o removal of reference to Git-SVN bridge Changes in version 1.13.2 o cleared up package dependencies and namespace o reference to Bioconductor Git-SVN bridge o minor corrections to vignette Changes in version 1.5.1 o made arguments 'xlab' and 'ylab' accessible to users Changes in version 1.1.1 o simplified interface of plot() Changes in version 1.1.0 o changed version number to 1.1.0 for consistency with previous versions published on the author's institute page o minor improvements of vignette (accessor functions) o fixed bug (error when calling predict() on a BString/AAString object without previously loading Biostrings) o fixed bug in predict() for short sequences Changes in version 0.99.1 o minor changes to the code chunks in the vignette Changes in version 0.99.0 o first version submitted to Bioconductor