Changes in version 1.3.3 o plotPromoters is deprecated o Implemented three new functions - plotPCA: performs principal component analysis - plotHeatmap: heatmap visualization - integrateProactiv: integrate different proActiv runs Changes in version 1.1.22 o Update package-down site o Update NEWS for Bioconductor 3.13 Changes in version 1.1.18 o Gene expression data is now stored in the assays of the summarizedExperiment object returned by proActiv to facilitate easier filtering of the summarizedExperiment object. The metadata slot is now empty. o Plotting promoter activity: Implementation of boxplotPromoters function to plot boxplots of absolute promoter activity, relative promoter activity, and gene expression. o Identification of alternative promoters: Implementation of getAlternativePromoters, used to identify promoters that may exhibit alternative usage. Changes in version 1.1.15 o Implement getAlternativePromoters for identifying alternative promoters o Implement boxplotPromoters for visualizing promoter usage Changes in version 1.1.6 o Enforce condition vector to following naming conventions Changes in version 1.0.0 o Released with Bioconductor 3.12 Changes in version 0.99.0 o Submitted to Bioconductor