To cite package ‘pram’ in publications use:

  PRAM: a novel pooling approach for discovering intergenic transcripts
  from large-scale RNA sequencing experiments. Peng Liu, Alexandra A.
  Soukup, Emery H. Bresnick, Colin N. Dewey, and Sündüz Keleş. Genome
  Research, 2020. 30:1655-1666 doi:
  https://doi.org/10.1101/gr.252445.119

A BibTeX entry for LaTeX users is

  @Article{,
    title = {PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments},
    author = {Peng Liu and Alexandra A. Soukup and Emery H. Bresnick and Colin N. Dewey and Sündüz Keleş},
    year = {2020},
    volume = {30},
    pages = {1655-1666},
    journal = {Genome Research},
    doi = {10.1101/gr.252445.119},
  }