Package: postNet Type: Package Title: Post-transcriptional network modeling Description: A tool that enables in silico identification, integration, and modeling of mRNA features that influence post-transcriptional regulation of gene expression at a transcriptome-wide scale. Version: 1.1.0 Authors@R: c(person("Krzysztof", "Szkop", email = "krzysztof.szkop@gmail.com", role = c("aut","cre")), person("Kathleen", "Watt", email = "watt.kathleen@gmail.com", role = "aut"), person("Ola", "Larsson", email = "ola.larsson@ki.se", role = "aut")) License: MIT + file LICENSE Encoding: UTF-8 LazyLoad: true Depends: R (>= 4.5.0), Imports: dplyr, plyr, Biostrings, data.table, gridExtra, seqinr, R.utils, reshape2, vioplot, stringr, plotrix, gplots, ggplot2, ggrepel, anota2seq, memes, GenomicRanges, IRanges, WriteXLS, randomForest, igraph, Boruta, ROCR, caret, msigdb, ExperimentHub, AnnotationHub, GSEABase, fgsea, org.Hs.eg.db, org.Mm.eg.db, RColorBrewer, httr2, rvest, umap, clusterProfiler (>= 4.18.4), gage, withr, grDevices, graphics, methods, stats, utils, tools, BiocFileCache, curl LinkingTo: Rcpp, BH Suggests: knitr, rmarkdown, BiocStyle, pdftools, magick, testthat (>= 3.0.0) biocViews: GeneExpression, GeneRegulation, Transcriptomics, RiboSeq, RNASeq, Sequencing, Annotation, Network, FeatureExtraction VignetteBuilder: knitr URL: https://github.com/kszkop/postNet BugReports: https://github.com/kszkop/postNet/issues Config/testthat/edition: 3 Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev libfreetype6-dev git libglpk-dev make libgit2-dev libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl python3 libx11-dev zlib1g-dev libclang-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 13:07:03 UTC RemoteUrl: https://github.com/bioc/postNet RemoteRef: HEAD RemoteSha: 6b1e4b68bdf3ead80fe0a467742282932bb36f1a NeedsCompilation: yes Packaged: 2026-07-04 03:35:32 UTC; root Author: Krzysztof Szkop [aut, cre], Kathleen Watt [aut], Ola Larsson [aut] Maintainer: Krzysztof Szkop