Package: poem
Title: POpulation-based Evaluation Metrics
Version: 1.5.0
Authors@R: c(
    person("Siyuan", "Luo", email="roseluosy@gmail.com", role=c("cre","aut"), comment=c(ORCID="0009-0007-6404-3244")),
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("aut","ctb"),
           comment=c(ORCID="0000-0003-3418-4218")))
Description: This package provides a comprehensive set of external and
        internal evaluation metrics. It includes metrics for assessing
        partitions or fuzzy partitions derived from clustering results,
        as well as for evaluating subpopulation identification results
        within embeddings or graph representations. Additionally, it
        provides metrics for comparing spatial domain detection results
        against ground truth labels, and tools for visualizing spatial
        errors.
BugReports: https://github.com/RoseYuan/poem/issues
License: GPL (>= 3)
URL: https://roseyuan.github.io/poem/
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.1.0)
Imports: aricode, BiocNeighbors, BiocParallel, bluster, clevr, clue,
        cluster, elsa, fclust, igraph, Matrix, matrixStats, mclustcomp,
        methods, pdist, sp, spdep, stats, utils, SpatialExperiment,
        SummarizedExperiment
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, DT, dplyr, kableExtra,
        scico, cowplot, ggnetwork, ggplot2, tidyr, STexampleData
VignetteBuilder: knitr
biocViews: DimensionReduction, Clustering, GraphAndNetwork, Spatial,
        ATACSeq, SingleCell, RNASeq, Software, Visualization
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libglpk-dev libmagick++-dev gsfonts libicu-dev libxml2-dev
        libssl-dev libproj-dev libsqlite3-dev libudunits2-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:04:32 UTC
RemoteUrl: https://github.com/bioc/poem
RemoteRef: HEAD
RemoteSha: cc135509563215788e3f298f479094344d6fc6ca
NeedsCompilation: no
Packaged: 2026-05-30 07:09:23 UTC; root
Author: Siyuan Luo [cre, aut] (ORCID: <https://orcid.org/0009-0007-6404-3244>),
  Pierre-Luc Germain [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>)
Maintainer: Siyuan Luo <roseluosy@gmail.com>