NEWS

---

podkat 1.41.1

• updated DESCRIPTION file to new format (Authors@R)

podkat 1.35.1

• changed e-mail address of maintainer
• updated README.md and formatting of package vignette
• updated CITATION
• updated references in documentation

podkat 1.31.1

• changed arguments in qqplot() method for compatibility with new version of the standard function in the 'stats' package (added dummy arguments to avoid errors)
• minor adaptations of help pages

podkat 1.25.1

• adjusted NAMESPACE to account for changes in BiocGenerics package

podkat 1.23.2

• updates and documentation to vignette in order to adapt to newer version of Illumina's TruSeq DNA Exome library prep kit
• changed default col.names in readRegionsFromBedFile(); corresponding update of help page

podkat 1.23.1

• re-created genome data objects (old data objects had become incompatible with newer 'BSgenome' version)

podkat 1.19.1

• fix in nullModel() method to ensure compatibility with R 4.0

podkat 1.17.3

• removed change history from package vignette for easier maintenance

podkat 1.17.2

• minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars

podkat 1.17.1

• changed summary() method for VariantAnnotation class in order to stay compatible with print() method in GenomicRanges package
• corresponding minor adaptations in documentation and package vignette

podkat 1.15.1

• changed Rsamtools API to Rhtslib API

podkat 1.5.4

• fix in vignette code that became necessary because of a change in the hg38 transcript annotation

podkat 1.5.3

• readRegionsFromBedFile() now allows for including metadata columns
• corresponding changes in documentation
• fix of call to method rowRanges() into suggested package
• fix of citation info file
• fix of inst/NEWS

podkat 1.5.2

• version number bump for technical reasons related to Bioconductor build servers

podkat 1.5.1

• version number bump for technical reasons related to Bioconductor build servers

podkat 1.3.1

• added missing method readVariantInfo() for signature 'character', 'GRanges'
• minor streamlining of source code of readGenotypeMatrix()
• corrections of namespace imports

podkat 1.1.3

• further fix of weights() method for signature 'AssocTestResultRanges'

podkat 1.1.2

• fix of weights() method for signature 'AssocTestResultRanges'

podkat 1.1.1

• fix of filterResults() method for signature 'GRanges'

podkat 1.0.0

• first official release as part of Bioconductor 3.1