NEWS

---

podkat 1.35.1

• changed e-mail address of maintainer
• updated README.md and formatting of package vignette
• updated CITATION
• updated references in documentation

podkat 1.35.0

• new branch for Bioconductor 3.19 devel

podkat 1.34.0

• release as part of Bioconductor 3.18

podkat 1.33.0

• new branch for Bioconductor 3.18 devel

podkat 1.32.0

• release as part of Bioconductor 3.17

podkat 1.31.1

• changed arguments in qqplot() method for compatibility with new version of the standard function in the 'stats' package (added dummy arguments to avoid errors)
• minor adaptations of help pages

podkat 1.31.0

• new branch for Bioconductor 3.17 devel

podkat 1.30.0

• release as part of Bioconductor 3.16

podkat 1.29.0

• new branch for Bioconductor 3.16 devel

podkat 1.28.0

• release as part of Bioconductor 3.15

podkat 1.27.0

• new branch for Bioconductor 3.15 devel

podkat 1.26.0

• release as part of Bioconductor 3.14

podkat 1.25.1

• adjusted NAMESPACE to account for changes in BiocGenerics package

podkat 1.25.0

• new branch for Bioconductor 3.14 devel

podkat 1.24.0

• release as part of Bioconductor 3.13

podkat 1.23.2

• updates and documentation to vignette in order to adapt to newer version of Illumina's TruSeq DNA Exome library prep kit
• changed default col.names in readRegionsFromBedFile(); corresponding update of help page

podkat 1.23.1

• re-created genome data objects (old data objects had become incompatible with newer 'BSgenome' version)

podkat 1.23.0

• new branch for Bioconductor 3.13 devel

podkat 1.22.0

• release as part of Bioconductor 3.12

podkat 1.21.0

• new branch for Bioconductor 3.12 devel

podkat 1.20.0

• release as part of Bioconductor 3.11

podkat 1.19.1

• fix in nullModel() method to ensure compatibility with R 4.0

podkat 1.19.0

• new branch for Bioconductor 3.11 devel

podkat 1.18.0

• release as part of Bioconductor 3.10

podkat 1.17.3

• removed change history from package vignette for easier maintenance

podkat 1.17.2

• minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars

podkat 1.17.1

• changed summary() method for VariantAnnotation class in order to stay compatible with print() method in GenomicRanges package
• corresponding minor adaptations in documentation and package vignette

podkat 1.17.0

• new branch for Bioconductor 3.10 devel

podkat 1.16.0

• release as part of Bioconductor 3.9

podkat 1.15.1

• changed Rsamtools API to Rhtslib API

podkat 1.15.0

• new branch for Bioconductor 3.9 devel

podkat 1.14.0

• release as part of Bioconductor 3.8

podkat 1.13.0

• new branch for Bioconductor 3.8 devel

podkat 1.12.0

• release as part of Bioconductor 3.7

podkat 1.11.0

• new branch for Bioconductor 3.7 devel

podkat 1.10.0

• release as part of Bioconductor 3.6

podkat 1.9.0

• new branch for Bioconductor 3.6 devel

podkat 1.8.0

• release as part of Bioconductor 3.5

podkat 1.7.0

• new branch for Bioconductor 3.5 devel

podkat 1.6.0

• release as part of Bioconductor 3.4

podkat 1.5.4

• fix in vignette code that became necessary because of a change in the hg38 transcript annotation

podkat 1.5.3

• readRegionsFromBedFile() now allows for including metadata columns
• corresponding changes in documentation
• fix of call to method rowRanges() into suggested package
• fix of citation info file
• fix of inst/NEWS

podkat 1.5.2

• version number bump for technical reasons related to Bioconductor build servers

podkat 1.5.1

• version number bump for technical reasons related to Bioconductor build servers

podkat 1.5.0

• new branch for Bioconductor 3.4 devel

podkat 1.4.0

• release as part of Bioconductor 3.3

podkat 1.3.1

• added missing method readVariantInfo() for signature 'character', 'GRanges'
• minor streamlining of source code of readGenotypeMatrix()
• corrections of namespace imports

podkat 1.3.0

• new branch for Bioconductor 3.3 devel

podkat 1.2.0

• release as part of Bioconductor 3.2

podkat 1.1.3

• further fix of weights() method for signature 'AssocTestResultRanges'

podkat 1.1.2

• fix of weights() method for signature 'AssocTestResultRanges'

podkat 1.1.1

• fix of filterResults() method for signature 'GRanges'

podkat 1.1.0

• new branch for Bioconductor 3.2 devel

podkat 1.0.0

• first official release as part of Bioconductor 3.1