NEWS
podkat 1.41.1
- updated DESCRIPTION file to new format (Authors@R)
podkat 1.35.1
- changed e-mail address of maintainer
- updated README.md and formatting of package vignette
- updated CITATION
- updated references in documentation
podkat 1.31.1
- changed arguments in qqplot() method for compatibility with new version of
the standard function in the 'stats' package (added dummy arguments to
avoid errors)
- minor adaptations of help pages
podkat 1.25.1
- adjusted NAMESPACE to account for changes in BiocGenerics package
podkat 1.23.2
- updates and documentation to vignette in order to adapt to newer version of
Illumina's TruSeq DNA Exome library prep kit
- changed default col.names in readRegionsFromBedFile(); corresponding update of
help page
podkat 1.23.1
- re-created genome data objects (old data objects had become incompatible
with newer 'BSgenome' version)
podkat 1.19.1
- fix in nullModel() method to ensure compatibility with R 4.0
podkat 1.17.3
- removed change history from package vignette for easier maintenance
podkat 1.17.2
- minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars
podkat 1.17.1
- changed summary() method for VariantAnnotation class in order to stay
compatible with print() method in GenomicRanges package
- corresponding minor adaptations in documentation and package vignette
podkat 1.15.1
- changed Rsamtools API to Rhtslib API
podkat 1.5.4
- fix in vignette code that became necessary because of a change in
the hg38 transcript annotation
podkat 1.5.3
- readRegionsFromBedFile() now allows for including metadata columns
- corresponding changes in documentation
- fix of call to method rowRanges() into suggested package
- fix of citation info file
- fix of inst/NEWS
podkat 1.5.2
- version number bump for technical reasons related to Bioconductor
build servers
podkat 1.5.1
- version number bump for technical reasons related to Bioconductor
build servers
podkat 1.3.1
- added missing method readVariantInfo() for signature
'character', 'GRanges'
- minor streamlining of source code of readGenotypeMatrix()
- corrections of namespace imports
podkat 1.1.3
- further fix of weights() method for signature 'AssocTestResultRanges'
podkat 1.1.2
- fix of weights() method for signature 'AssocTestResultRanges'
podkat 1.1.1
- fix of filterResults() method for signature 'GRanges'
podkat 1.0.0
- first official release as part of Bioconductor 3.1