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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "pmp" in publications use:'
type: software
license: GPL-3.0-only
title: 'pmp: Peak Matrix Processing and signal batch correction for metabolomics datasets'
version: 1.17.0
abstract: 'Methods and tools for (pre-)processing of metabolomics datasets (i.e. peak
  matrices), including filtering, normalisation, missing value imputation, scaling,
  and signal drift and batch effect correction methods. Filtering methods are based
  on: the fraction of missing values (across samples or features); Relative Standard
  Deviation (RSD) calculated from the Quality Control (QC) samples; the blank samples.
  Normalisation methods include Probabilistic Quotient Normalisation (PQN) and normalisation
  to total signal intensity. A unified user interface for several commonly used missing
  value imputation algorithms is also provided. Supported methods are: k-nearest neighbours
  (knn), random forests (rf), Bayesian PCA missing value estimator (bpca), mean or
  median value of the given feature and a constant small value. The generalised logarithm
  (glog) transformation algorithm is available to stabilise the variance across low
  and high intensity mass spectral features. Finally, this package provides an implementation
  of the Quality Control-Robust Spline Correction (QCRSC) algorithm for signal drift
  and batch effect correction of mass spectrometry-based datasets.'
authors:
- family-names: Jankevics
  given-names: Andris
  email: a.jankevics@bham.ac.uk
- family-names: Lloyd
  given-names: Gavin Rhys
  email: g.r.lloyd@bham.ac.uk
- family-names: Weber
  given-names: Ralf Johannes Maria
  email: r.j.weber@bham.ac.uk
repository: https://bioc.r-universe.dev
contact:
- family-names: Lloyd
  given-names: Gavin Rhys
  email: g.r.lloyd@bham.ac.uk