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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "plaid" in publications use:'
type: software
license: GPL-3.0-only
title: 'plaid: PLAID ultrafast gene set enrichment scoring'
version: 1.1.0
doi: 10.1093/bioinformatics/btaf621
identifiers:
- type: doi
  value: 10.32614/CRAN.package.plaid
abstract: PLAID (Pathway Level Average Intensity Detection) is an ultra-fast method
  to compute single-sample enrichment scores for gene expression or proteomics data.
  For each sample, plaid computes the gene set score as the average intensity of the
  genes/proteins in the gene set. The output is a gene set score matrix suitable for
  further analyses.
authors:
- family-names: Kwee
  given-names: Ivo
  email: ivo.kwee@bigomics.ch
  orcid: https://orcid.org/0000-0002-2751-4218
- family-names: Zito
  given-names: Antonino
  email: antonino.zito@bigomics.ch
  orcid: https://orcid.org/0000-0003-1931-984X
preferred-citation:
  type: article
  title: 'PLAID: ultrafast single-sample gene set enrichment scoring'
  authors:
  - name: Zito
  - name: Antonino
  - family-names: Montagut
    given-names: Escribà
  - name: Xavier
  - name: Scorici
  - name: Gabriela
  - name: Martinelli
  - name: Axel
  - name: Akhmedov
  - name: Murodzhon
  - name: Kwee
  - name: Ivo
  journal: Bioinformatics
  year: '2025'
  doi: 10.1093/bioinformatics/btaf621
repository: https://bioc.r-universe.dev
repository-code: https://github.com/bigomics/plaid
commit: 6d2ad5c15e15698c566e89ed27d1f8561b5fdb5e
url: https://bigomics.github.io/plaid/
date-released: '2026-04-28'
contact:
- family-names: Zito
  given-names: Antonino
  email: antonino.zito@bigomics.ch
  orcid: https://orcid.org/0000-0003-1931-984X