NEWS
plaid 0.99.0
INITIAL RELEASE
- plaid: ultra-fast single-sample enrichment scoring using rank-based
statistics
- replaid methods: fast implementations of popular enrichment methods
(ssGSEA, GSVA, singscore, UCell, AUCell, scSE)
- dualGSEA: statistical testing for differential enrichment with dualGSEA
- Full Bioconductor integration with SummarizedExperiment,
SingleCellExperiment, and BiocSet support
- GMT utilities for reading, writing, and converting gene set files
- Performance optimizations including sparse matrix support and parallel
processing