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cff-version: 1.2.0
message: 'To cite package "pipeFrame" in publications use:'
type: software
license: GPL-3.0-only
title: 'pipeFrame: Pipeline framework for bioinformatics in R'
version: 1.21.0
abstract: pipeFrame is an R package for building a componentized bioinformatics pipeline.
  Each step in this pipeline is wrapped in the framework, so the connection among
  steps is created seamlessly and automatically. Users could focus more on fine-tuning
  arguments rather than spending a lot of time on transforming file format, passing
  task outputs to task inputs or installing the dependencies. Componentized step elements
  can be customized into other new pipelines flexibly as well. This pipeline can be
  split into several important functional steps, so it is much easier for users to
  understand the complex arguments from each step rather than parameter combination
  from the whole pipeline. At the same time, componentized pipeline can restart at
  the breakpoint and avoid rerunning the whole pipeline, which may save a lot of time
  for users on pipeline tuning or such issues as power off or process other interrupts.
authors:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com
- family-names: Ma
  given-names: Shining
repository: https://bioc.r-universe.dev
repository-code: https://github.com/wzthu/pipeFrame
url: https://github.com/wzthu/pipeFrame
contact:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com