Package: phylobar
Title: Interactive construction of stacked barplots using hierarchies
Version: 0.99.12
Authors@R: 
    c(
        person("Kris", "Sankaran", , "ksankaran@wisc.edu", role = c("aut", "cre", "fnd"), comment = c(ORCID = "0000-0002-9415-1971")),
        person("Megan", "Kuo", , "", role = c("aut")),
        person("Saritha", "Kodikara", , "", role = c("aut")),
        person("Jiadong", "Mao", , "chiatungmao@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0002-3818-1981"))
    )
Description: The phylobar package supports interactive visualization of
        microbiome data by allowing a stacked barplot to be constructed
        using a guiding taxonomic or phylogenetic hierarchy. The
        package provides a strategy for collapsing and expanding the
        hierarchy to different levels of resolution and then for
        interactively "painting" the stacked barplot by placing the
        mouse over different subtrees. This makes it possible to
        interactively test different color palettes at different
        resolution and identify taxonomic groups with interesting
        variation before settling on a final stacked barplot. One
        advantage of the approach is that multiple levels of taxonomic
        resolution can be compared at once within the same view.
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/mkdiro-O/phylobar,
        http://mkdiro-o.github.io/phylobar
BugReports: https://github.com/mkdiro-O/phylobar/issues
Roxygen: list(markdown = TRUE)
Suggests: BiocStyle, DESeq2, dplyr, ggplot2, mia, miaViz, microbiome,
        phyloseq, readr, rmarkdown, scater, seriation, stringr,
        testthat (>= 3.0.0), tibble, tidyr, zen4R
VignetteBuilder: knitr
Imports: ape, cluster, htmlwidgets, knitr, phangorn, purrr
Depends: R (>= 4.5.0)
biocViews: Software, Microbiome, Phylogenetics, Visualization
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libuv1-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-05 04:35:50 UTC
RemoteUrl: https://github.com/bioc/phylobar
RemoteRef: HEAD
RemoteSha: 6484c110aae217bc93b389bba75785bb7a99a00f
NeedsCompilation: no
Packaged: 2026-07-08 09:09:04 UTC; root
Author: Kris Sankaran [aut, cre, fnd] (ORCID:
    <https://orcid.org/0000-0002-9415-1971>),
  Megan Kuo [aut],
  Saritha Kodikara [aut],
  Jiadong Mao [aut] (ORCID: <https://orcid.org/0000-0002-3818-1981>)
Maintainer: Kris Sankaran <ksankaran@wisc.edu>