Package: peakCombiner
Title: The R package to curate and merge enriched genomic regions into
        consensus peak sets
Version: 1.3.0
Description: peakCombiner, a fully R based, user-friendly, transparent,
        and customizable tool that allows even novice R users to create
        a high-quality consensus peak list. The modularity of its
        functions allows an easy way to optimize input and output data.
        A broad range of accepted input data formats can be used to
        create a consensus peak set that can be exported to a file or
        used as the starting point for most downstream peak analyses.
Authors@R: c(person("Markus", "Muckenhuber",
                email = "markusmuckenhuber@gmx.at", 
                role = c("aut", "cre"), 
                comment = c(ORCID = "0000-0003-1897-2329")),
             person("Charlotte", "Soneson",
                email = "",
                role = c("aut"),
                comment = c(ORCID = "0000-0003-3833-2169")),
             person("Michael", "Stadler",
                email = "",
                role = c("aut"),
                comment = c(ORCID = "0000-0002-2269-4934")),
            person("Kathleen", "Sprouffske",
                email = "",
                role = c("aut"),
                comment = c(ORCID = "0000-0001-7081-2598")),
             person("Novartis Biomedical Research", 
                role = c("cph")))
Depends: R (>= 4.5.0)
License: MIT + file LICENSE
LazyData: FALSE
biocViews: WorkflowStep, Preprocessing, ChipOnChip
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), tidyverse, rmarkdown, styler, cli,
        lintr, rtracklayer, knitr, devtools, ggplot2, BiocStyle,
        BiocManager, usethis, utils, AnnotationHub, GenomeInfoDb
Imports: tidyr, dplyr (>= 1.1.2), IRanges, GenomicRanges, tidyselect,
        purrr, readr (>= 2.1.2), tibble (>= 3.2.1), rlang, stringr,
        here, stats, Seqinfo
URL: https://github.com/novartis/peakCombiner/,
        https://bioconductor.org/packages/peakCombiner
BugReports: https://github.com/novartis/peakCombiner/issues
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libx11-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:05:38 UTC
RemoteUrl: https://github.com/bioc/peakCombiner
RemoteRef: HEAD
RemoteSha: fadf0eafd36627bf40ec094385f6be91a7915003
NeedsCompilation: no
Packaged: 2026-07-04 10:57:23 UTC; root
Author: Markus Muckenhuber [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1897-2329>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>),
  Kathleen Sprouffske [aut] (ORCID:
    <https://orcid.org/0000-0001-7081-2598>),
  Novartis Biomedical Research [cph]
Maintainer: Markus Muckenhuber <markusmuckenhuber@gmx.at>