Fixed dependency changes for RSQLite 1.0.0
GenericArray is now available to accommodate oligo support for custom CDFs
Changed dependency on RSQLite. Now, version >= 1.0.0 is required.
GenericArray is now available to support customized annotations.
Removed dependency on RConverters.h (Prof Ripley)
The annotation packages for Affymetrix Tiling arrays now contain strand information (suggestion and implementation: Kristof De Beuf)
The annotation packages for SNP chips no longer have a 'fragment_length*' column in the featureSet/featureSetCNV tables. Fragment length now has its own table, 'fragmentLength' (for SNP probes) and 'fragmentLengthCNV' (for CN probes).
Rda files available through annotation packages created by pdInfoBuilder > 1.17 are compressed using 'xz'.
Fixed License field on the template.
Added an additional template for SNP arrays supported by CRLMM.
Added support to Axiom chips: 'AffySNPPDInfoPkgSeed2' gets a new slot 'axiom', which takes TRUE or FALSE, depending on the specific array type.
Added 'ZipData: no' to the template, which caused problems on Windows systems.
For Gene and Exon arrays, all PM probes are in the pmfeature table (matching what happens with expression arrays)
Updated package template to require oligo (>= 1.11.18)
Fixed creation of indices for Gene arrays