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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "pcaExplorer" in publications use:'
type: software
license: MIT
title: 'pcaExplorer: Interactive Visualization of RNA-seq Data Using a Principal Components
  Approach'
version: 2.31.0
doi: 10.1186/s12859-019-2879-1
abstract: This package provides functionality for interactive visualization of RNA-seq
  datasets based on Principal Components Analysis. The methods provided allow for
  quick information extraction and effective data exploration. A Shiny application
  encapsulates the whole analysis.
authors:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
preferred-citation:
  type: article
  title: 'pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal
    components'
  authors:
  - family-names: Marini
    given-names: Federico
    email: marinif@uni-mainz.de
    orcid: https://orcid.org/0000-0003-3252-7758
  - family-names: Binder
    given-names: Harald
  journal: BMC Bioinformatics
  volume: '20'
  issue: '1'
  year: '2019'
  month: '6'
  doi: 10.1186/s12859-019-2879-1
  url: https://bioconductor.org/packages/pcaExplorer/
  start: '331'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/federicomarini/pcaExplorer
url: https://federicomarini.github.io/pcaExplorer/
date-released: '2024-04-07'
contact:
- family-names: Marini
  given-names: Federico
  email: marinif@uni-mainz.de
  orcid: https://orcid.org/0000-0003-3252-7758
references:
- type: article
  title: Interactive and Reproducible Workflows for Exploring and Modeling RNA-seq
    Data with pcaExplorer, ideal, and GeneTonic
  authors:
  - family-names: Ludt
    given-names: Annekathrin
  - family-names: Ustjanzew
    given-names: Arsenij
  - family-names: Binder
    given-names: Harald
  - family-names: Strauch
    given-names: Konstantin
  - family-names: Marini
    given-names: Federico
  journal: Current Protocols
  volume: '2'
  issue: '4'
  year: '2022'
  month: '4'
  doi: 10.1002/cpz1.411
  start: e411