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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "paxtoolsr" in publications use:'
type: software
license: LGPL-3.0-only
title: 'paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway
  Commons'
version: 1.39.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.paxtoolsr
abstract: 'The package provides a set of R functions for interacting with BioPAX OWL
  files using Paxtools and the querying Pathway Commons (PC) molecular interaction
  database. Pathway Commons is a project by the Memorial Sloan-Kettering Cancer Center
  (MSKCC), Dana-Farber Cancer Institute (DFCI), and the University of Toronto. Pathway
  Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc,
  IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.'
authors:
- family-names: Luna
  given-names: Augustin
  email: lunaa@cbio.mskcc.org
preferred-citation:
  type: article
  title: 'PaxtoolsR: Pathway Analysis in R Using Pathway Commons'
  authors:
  - name: Luna
  - name: A.
  - name: Babur
  - name: O.
  - name: Aksoy
  - family-names: A.
    given-names: B.
  - name: Demir
  - name: E.
  - name: Sander
  - name: C.
  journal: Bioinformatics
  year: '2015'
  month: '12'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BioPAX/paxtoolsr
commit: 444550a898d108bcd67d8834180e6adaa9c637f9
url: https://github.com/BioPAX/paxtoolsr
date-released: '2021-10-25'
contact:
- family-names: Luna
  given-names: Augustin
  email: lunaa@cbio.mskcc.org