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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "pathMED" in publications use:'
type: software
license: GPL-2.0-only
title: 'pathMED: Scoring Personalized Molecular Portraits'
version: 1.5.1
doi: 10.1093/bib/bbac332
identifiers:
- type: doi
  value: 10.32614/CRAN.package.pathMED
abstract: PathMED is a collection of tools to facilitate precision medicine studies
  with omics data (e.g. transcriptomics). Among its funcionalities, genesets scores
  for individual samples may be calculated with several methods. These scores may
  be used to train machine learning models and to predict clinical features on new
  data. For this, several machine learning methods are evaluated in order to select
  the best method based on internal validation and to tune the hyperparameters. Performance
  metrics and a ready-to-use model to predict the outcomes for new patients are returned.
authors:
- family-names: Martorell-Marugán
  given-names: Jordi
  email: jmartorellm@gmail.com
  orcid: https://orcid.org/0000-0002-5186-0735
- family-names: Toro-Domínguez
  given-names: Daniel
  email: danieltorodominguez@gmail.com
  orcid: https://orcid.org/0000-0001-8440-312X
- family-names: López-Domínguez
  given-names: Raúl
  email: raul.lopez@genyo.es
  orcid: https://orcid.org/0000-0001-8634-117X
- family-names: Ellson
  given-names: Iván
  email: ivan.ellson@genyo.es
  orcid: https://orcid.org/0000-0001-6307-3141
preferred-citation:
  type: article
  title: Scoring personalized molecular portraits identify Systemic Lupus Erythematosus
    subtypes and predict individualized drug responses, symptomatology and disease
    progression
  authors:
  - family-names: Toro-Dominguez
    given-names: Daniel
  - family-names: Martorell-Marugan
    given-names: Jordi
  - family-names: al.
    given-names: et
  year: '2022'
  doi: 10.1093/bib/bbac332
  publisher:
    name: OXFORD ACADEMIC
  url: https://academic.oup.com/bib/article/23/5/bbac332/6659743
  journal: Briefings in Bioinformatics
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jordimartorell/pathMED
commit: 07b9fe20731fe15348a63c83e82ba163cadafebb
url: https://github.com/jordimartorell/pathMED
date-released: '2026-06-03'
contact:
- family-names: Martorell-Marugán
  given-names: Jordi
  email: jmartorellm@gmail.com
  orcid: https://orcid.org/0000-0002-5186-0735