# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "padma" in publications use:'
type: software
title: 'padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor
  Analysis'
version: 1.15.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.padma
abstract: Use multiple factor analysis to calculate individualized pathway-centric
  scores of deviation with respect to the sampled population based on multi-omic assays
  (e.g., RNA-seq, copy number alterations, methylation, etc). Graphical and numerical
  outputs are provided to identify highly aberrant individuals for a particular pathway
  of interest, as well as the gene and omics drivers of aberrant multi-omic profiles.
authors:
- family-names: Rau
  given-names: Andrea
  email: andrea.rau@inrae.fr
  orcid: https://orcid.org/0000-0001-6469-488X
- family-names: Manansala
  given-names: Regina
  email: manansa2@uwm.edu
- family-names: Laloë
  given-names: Denis
  email: denis.laloe@inrae.fr
- family-names: Auer
  given-names: Paul
  email: pauer@uwm.edu
preferred-citation:
  type: article
  title: Individualized multi-omic pathway deviation scores using multiple factor
    analysis
  authors:
  - family-names: Rau
    given-names: Andrea
    email: andrea.rau@inrae.fr
    orcid: https://orcid.org/0000-0001-6469-488X
  - family-names: Manansala
    given-names: Regina
    email: manansa2@uwm.edu
  - family-names: Flister
    given-names: Michael J.
  - family-names: Rui
    given-names: Hallgeir
  - family-names: Jaffrezic
    given-names: Florence
  - family-names: Laloe
    given-names: Denis
  - family-names: Auer
    given-names: Paul L.
  journal: Biostatistics (accepted)
  volume: 'doi: https://doi.org/10.1101/827022'
  year: '2020'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/andreamrau/padma
commit: fc1ca8da9d3bed2e22265a8c626de6ce4b32bd25
url: https://github.com/andreamrau/padma
contact:
- family-names: Rau
  given-names: Andrea
  email: andrea.rau@inrae.fr
  orcid: https://orcid.org/0000-0001-6469-488X