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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "packFinder" in publications use:'
type: software
license: GPL-2.0-only
title: 'packFinder: de novo Annotation of Pack-TYPE Transposable Elements'
version: 1.17.0
doi: 10.1371/journal.pgen.1010078
abstract: Algorithm and tools for in silico pack-TYPE transposon discovery. Filters
  a given genome for properties unique to DNA transposons and provides tools for the
  investigation of returned matches. Sequences are input in DNAString format, and
  ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).
authors:
- family-names: Gisby
  given-names: Jack
  email: jackgisby@gmail.com
  orcid: https://orcid.org/0000-0003-0511-8123
- family-names: Catoni
  given-names: Marco
  email: m.catoni@bham.ac.uk
  orcid: https://orcid.org/0000-0002-3258-2522
preferred-citation:
  type: article
  title: The widespread nature of Pack-TYPE transposons reveals their importance for
    plant genome evolution
  authors:
  - family-names: Gisby
    given-names: Jack S.
  - family-names: Catoni
    given-names: Marco
    email: m.catoni@bham.ac.uk
    orcid: https://orcid.org/0000-0002-3258-2522
  year: '2022'
  journal: PLOS Genetics
  doi: 10.1371/journal.pgen.1010078
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jackgisby/packFinder
url: https://github.com/jackgisby/packFinder
contact:
- family-names: Gisby
  given-names: Jack
  email: jackgisby@gmail.com
  orcid: https://orcid.org/0000-0003-0511-8123