# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "pRoloc" in publications use:'
type: software
license: GPL-2.0-only
title: 'pRoloc: A unifying bioinformatics framework for spatial proteomics'
version: 1.45.1
abstract: The pRoloc package implements machine learning and visualisation methods
  for the analysis and interogation of quantitiative mass spectrometry data to reliably
  infer protein sub-cellular localisation.
authors:
- family-names: Gatto
  given-names: Laurent
  email: laurent.gatto@uclouvain.be
- family-names: Breckels
  given-names: Lisa
  email: lms79@cam.ac.uk
- family-names: Crook
  given-names: Oliver
  email: oliver.crook@stats.ox.ac.uk
preferred-citation:
  type: article
  title: Mass-spectrometry based spatial proteomics data analysis using pRoloc and
    pRolocdata
  authors:
  - family-names: Gatto
    given-names: Laurent
    email: laurent.gatto@uclouvain.be
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Wieczorek
    given-names: Samuel
  - family-names: Burger
    given-names: Thomas
  - family-names: Lilley
    given-names: Kathryn S.
  journal: Bioinformatics
  year: '2014'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/lgatto/pRoloc
url: https://github.com/lgatto/pRoloc
contact:
- family-names: Gatto
  given-names: Laurent
  email: laurent.gatto@uclouvain.be
references:
- type: article
  title: The effect of organelle discovery upon sub-cellular protein localisation
  authors:
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Gatto
    given-names: Laurent
  - family-names: Christoforou
    given-names: Andy
  - family-names: Groen
    given-names: Arnoud J.
  - family-names: Lilley
    given-names: Kathryn S.
  - family-names: Trotter
    given-names: Matthew W.
  journal: J Proteomics
  year: '2013'
- type: article
  title: A foundation for reliable spatial proteomics data analysis
  authors:
  - family-names: Gatto
    given-names: Laurent
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Burger
    given-names: Thomas
  - family-names: Nightingale
    given-names: Daniel J.
  - family-names: Groen
    given-names: Arnoud J.
  - family-names: Campbell
    given-names: Callum
  - family-names: Mulvey
    given-names: Claire M.
  - family-names: Christroforou
    given-names: Andy
  - family-names: Ferro
    given-names: Myriam
  - family-names: Lilley
    given-names: Kathryn S.
  journal: Mol Cell Proteomics
  year: '2014'
- type: article
  title: 'Learning from heterogeneous data sources: an application in spatial proteomics'
  authors:
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Holden
    given-names: Sean
  - family-names: Wonjar
    given-names: David
  - family-names: Mulvey
    given-names: Claire M.
  - family-names: Christoforou
    given-names: Andy
  - family-names: Groen
    given-names: Arnoud
  - family-names: Trotter
    given-names: Matthew W.B.
  - family-names: Kohlbacker
    given-names: Oliver
  - family-names: Lilley
    given-names: Kathryn S.
  - family-names: Gatto
    given-names: Laurent
  journal: PLoS Comput Biol
  year: '2016'
- type: article
  title: A Bioconductor workflow for processing and analysing spatial proteomics data
  authors:
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Mulvey
    given-names: Claire M.
  - family-names: Lilley
    given-names: Kathryn S.
  - family-names: Gatto
    given-names: Laurent
  journal: F1000Research
  year: '2016'
- type: article
  title: A Bioconductor workflow for the Bayesian analysis of spatial proteomics
  authors:
  - family-names: Crook
    given-names: Oliver M.
  - family-names: Breckels
    given-names: Lisa M.
  - family-names: Lilley
    given-names: Kathryn S.
  - family-names: Kirk
    given-names: Paul D.W.
  - family-names: Gatto
    given-names: Laurent
  journal: F1000Research
  year: '2019'