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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "orthos" in publications use:'
type: software
license: MIT
title: 'orthos: `orthos` is an R package for variance decomposition using conditional
  variational auto-encoders'
version: 1.3.0
abstract: '`orthos` decomposes RNA-seq contrasts, for example obtained from a gene
  knock-out or compound treatment experiment, into unspecific and experiment-specific
  components. Original and decomposed contrasts can be efficiently queried against
  a large database of contrasts (derived from ARCHS4, https://maayanlab.cloud/archs4/)
  to identify similar experiments. `orthos` furthermore provides plotting functions
  to visualize the results of such a search for similar contrasts.'
authors:
- family-names: Papasaikas
  given-names: Panagiotis
  email: panagiotis.papasaikas@fmi.ch
  orcid: https://orcid.org/0000-0002-1640-7636
- family-names: Soneson
  given-names: Charlotte
  email: charlotte.soneson@fmi.ch
  orcid: https://orcid.org/0000-0003-3833-2169
- family-names: Stadler
  given-names: Michael
  email: michael.stadler@fmi.ch
  orcid: https://orcid.org/0000-0002-2269-4934
repository: https://bioc.r-universe.dev
contact:
- family-names: Papasaikas
  given-names: Panagiotis
  email: panagiotis.papasaikas@fmi.ch
  orcid: https://orcid.org/0000-0002-1640-7636