Package: oppar
Type: Package
Title: Outlier profile and pathway analysis in R
Version: 1.41.0
Date: 2016
Authors@R: c(
    person("Chenwei", "Wang", email = "chenwei.wang@qut.edu.au", role = "aut"),
    person("Alperen", "Taciroglu", role = "aut"),
    person("Stefan R", "Maetschke", role = "aut"),
    person("Colleen C", "Nelson", role = "aut"),
    person("Mark", "Ragan", role = "aut"),
    person("Melissa", "Davis", email = "davis.m@wehi.edu.au", role = "aut"),
    person("Soroor", "Hediyeh zadeh", email = "hediyehzadeh.s@wehi.edu.au",role = "cre"),
    person("Momeneh","Foroutan", email= "mforoutan@student.unimelb.edu.au", role = "ctr"))
Description: The R implementation of mCOPA package published by Wang et
        al. (2012). Oppar provides methods for Cancer Outlier profile
        Analysis. Although initially developed to detect outlier genes
        in cancer studies, methods presented in oppar can be used for
        outlier profile analysis in general. In addition, tools are
        provided for gene set enrichment and pathway analysis.
biocViews: Pathways, GeneSetEnrichment, SystemsBiology, GeneExpression,
        Software
Depends: R (>= 3.3)
Imports: Biobase, methods, GSEABase, GSVA
License: GPL-2
LazyData: true
Collate: 'class_OPPARList.R' 'class_nuchar.R' 'getSampleOutlier.R'
        'getSubtypeProbes.R' 'gsva.R' 'opa-generic-methods.R' 'oppar.R'
        'utils.R' 'zzz.R'
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, limma, org.Hs.eg.db, GO.db, snow, parallel
VignetteBuilder: knitr
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:43:19 UTC
RemoteUrl: https://github.com/bioc/oppar
RemoteRef: HEAD
RemoteSha: 892e38d188fe3ce5531183b48c5559e654205f11
NeedsCompilation: yes
Packaged: 2026-07-04 22:47:24 UTC; root
Author: Chenwei Wang [aut],
  Alperen Taciroglu [aut],
  Stefan R Maetschke [aut],
  Colleen C Nelson [aut],
  Mark Ragan [aut],
  Melissa Davis [aut],
  Soroor Hediyeh zadeh [cre],
  Momeneh Foroutan [ctr]
Maintainer: Soroor Hediyeh zadeh <hediyehzadeh.s@wehi.edu.au>