NEWS

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oposSOM 2.11.1

• multiple bugfixes e.g. caused by tsne package

oposSOM 2.9.1

• version bump to match Bioconductor version

oposSOM 2.1.3

• PAT letters now ordered according to module activation frequency

oposSOM 2.1.2

• New color palettes implemented

oposSOM 2.1.1

• Calculation of p-values for gene set enrichment is activated by default

oposSOM 2.1.0

• PSF analysis module integrated into oposSOM

oposSOM 2.0.8

• Mapping of indata features to Ensembl IDs not limited to 1:1 anymore

oposSOM 2.0.7

• Bugfix for class(...) error occuring in R > 4.0.0

oposSOM 2.0.6

• Bugfixes for write.csv function, very long geneset file names and package version

oposSOM 2.0.5

• "note"-slot introduced to oposSOM environment (preferences) and html summary table

oposSOM 2.0.4

• Check implemented if over-/under-expression modules were detected. Check implemented if PAT class definition can be applied

oposSOM 2.0.3

• Check for detected singleton spot modules implemented

oposSOM 2.0.2

• csv output for international spreadsheet format

oposSOM 2.0.1

• Colored edges in sample correlation networks & minor fixes

oposSOM 2.0.0

• Great performance boost by implementation of parallel SOM calculation. "som" package dependence removed