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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "openPrimeR" in publications use:'
type: software
license: GPL-2.0-only
title: 'openPrimeR: Multiplex PCR Primer Design and Analysis'
version: 1.27.0
abstract: An implementation of methods for designing, evaluating, and comparing primer
  sets for multiplex PCR. Primers are designed by solving a set cover problem such
  that the number of covered template sequences is maximized with the smallest possible
  set of primers. To guarantee that high-quality primers are generated, only primers
  fulfilling constraints on their physicochemical properties are selected. A Shiny
  app providing a user interface for the functionalities of this package is provided
  by the 'openPrimeRui' package.
authors:
- family-names: Döring
  given-names: Matthias
  email: matthias-doering@gmx.de
- family-names: Pfeifer
  given-names: Nico
  email: pfeifer@informatik.uni-tuebingen.de
preferred-citation:
  type: article
  title: openPrimeR for multiplex amplification of highly diverse templates
  authors:
  - family-names: Kreer
    given-names: Christoph
  - family-names: Döring
    given-names: Matthias
    email: matthias-doering@gmx.de
  - family-names: Lehnen
    given-names: Nathalie
  - family-names: Ercanoglu
    given-names: Meryem
  - family-names: Gieselmann
    given-names: Lutz
  - family-names: Luca
    given-names: Domnica
  - family-names: Jain
    given-names: Kanika
  - family-names: Schommers
    given-names: Philipp
  - family-names: Pfeifer
    given-names: Nico
    email: pfeifer@informatik.uni-tuebingen.de
  - family-names: Klein
    given-names: Florian
  journal: Journal of Immunological Methods
  year: '2020'
  publisher:
    name: Elsevier
  url: https://bioconductor.org/packages/release/bioc/html/openPrimeR.html
  start: '112752'
repository: https://bioc.r-universe.dev
contact:
- family-names: Döring
  given-names: Matthias
  email: matthias-doering@gmx.de
references:
- type: article
  title: Modeling the Amplification of Immunoglobulins through Machine Learning on
    Sequence-Specific Features
  authors:
  - family-names: Döring
    given-names: Matthias
  - family-names: Kreer
    given-names: Christoph
  - family-names: Lehnen
    given-names: Nathalie
  - family-names: Klein
    given-names: Florian
  - family-names: Pfeifer
    given-names: Nico
  year: '2019'
  journal: Scientific Reports
  volume: '9'
  issue: '1'
  publisher:
    name: Nature Publishing Group
  start: '1'
  end: '11'