NEWS

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omicplotR 1.7.1

• bug fix to cause by Shiny 1.4.0 (renderDataTable causes error in jquery). solution is to import DT package and specify DT::renderDataTable and DT::dataTableOutput.
• ensured that ALDEx2 dependency for aldex.plot feature is correctly implemented
• added Brandon Lieng as author

omicplotR 1.7.0

• bioconductor dev version 3.11, no changes since 1.5.4

omicplotR 1.5.4

• explicitly calling some functions to prevent conflicts (jsonlite::fromJSON)
• corrected namespace and description
• removed "require(libraries") from ui.
• bug fix for calculating aldex object. sometimes would need to click generate effect plot twice.
• version bump
• changed T to TRUE in rab_script and server.R

omicplotR 1.5.1

• choice of pseudocount or CZM
• changed how conditions are selected manually for effect size. now, you input the column number
• added ability to download GO slim annotated feature tables directly from MGNify database by inputting a Study ID
• added density plots for interactive effect sizes
• currently depends on specific version of ALDEx2 (temporary)

omicplotR 1.1.2

• bug fix for CZM in RAB plots. if not zeros, plots would fail.
• updated install instructions to use 'BiocManager'

omicplotR 1.1.1

• added slider inputs to change size and opacity of sample names for biplot and coloured biplot
• changed UI for filtering page
• added downloadable scripts for PCA biplots, dendrogram/barplots, and effect plots (simple effect plot script).

omicplotR 0.99.4

• changed vignette to html instead of pdf.
• edited vignette.

omicplotR 0.99.3

• bug fix. extrainformation.rmd changed to extrainformation.Rmd.

omicplotR 0.99.0

• release version.