Package: omicplotR
Title: Visual Exploration of Omic Datasets Using a Shiny App
Version: 1.33.0
Date: 2019-11-12
Authors@R: c(person("Daniel", "Giguere", email = "dgiguer@uwo.ca", role = c("aut", "cre")), person("Jean", "Macklaim", role = "aut"), person("Greg", "Gloor", role = "aut"))
biocViews: Software, DifferentialExpression, GeneExpression, GUI,
        RNASeq, DNASeq, Metagenomics, Transcriptomics, Bayesian,
        Microbiome, Visualization, Sequencing, ImmunoOncology
Description: A Shiny app for visual exploration of omic datasets as
        compositions, and differential abundance analysis using ALDEx2.
        Useful for exploring RNA-seq, meta-RNA-seq, 16s rRNA gene
        sequencing with visualizations such as principal component
        analysis biplots (coloured using metadata for visualizing each
        variable), dendrograms and stacked bar plots, and effect plots
        (ALDEx2). Input is a table of counts and metadata file (if
        metadata exists), with options to filter data by count or by
        metadata to remove low counts, or to visualize select samples
        according to selected metadata.
Imports: compositions, DT, grDevices, knitr, jsonlite, matrixStats,
        rmarkdown, shiny, stats, vegan, zCompositions
VignetteBuilder: knitr
Depends: R (>= 3.6), ALDEx2 (>= 1.18.0)
License: MIT + file LICENSE
LazyData: true
Encoding: UTF-8
RoxygenNote: 6.0.1
Config/pak/sysreqs: cmake make libjpeg-dev libpng-dev libuv1-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:14 UTC
RemoteUrl: https://github.com/bioc/omicplotR
RemoteRef: HEAD
RemoteSha: b136580e02fb239f06c86ec1aad7cf38b2b67fea
NeedsCompilation: no
Packaged: 2026-07-04 23:25:41 UTC; root
Author: Daniel Giguere [aut, cre],
  Jean Macklaim [aut],
  Greg Gloor [aut]
Maintainer: Daniel Giguere <dgiguer@uwo.ca>