Package: odseq
Type: Package
Title: Outlier detection in multiple sequence alignments
Version: 1.41.0
Date: 2015-12-20
Author: José Jiménez
Maintainer: José Jiménez <jose@jimenezluna.com>
Description: Performs outlier detection of sequences in a multiple
        sequence alignment using bootstrap of predefined distance
        metrics. Outlier sequences can make downstream analyses
        unreliable or make the alignments less accurate while they are
        being constructed. This package implements the OD-seq algorithm
        proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for
        aligned sequences and a variant using string kernels for
        unaligned sequences.
License: MIT + file LICENSE
LazyData: True
Encoding: UTF-8
biocViews: Alignment, MultipleSequenceAlignment
VignetteBuilder: knitr
Suggests: knitr(>= 1.11)
Depends: R (>= 3.2.3)
Imports: msa (>= 1.2.1), kebabs (>= 1.4.1), mclust (>= 5.1)
NeedsCompilation: no
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:43:15 UTC
RemoteUrl: https://github.com/bioc/odseq
RemoteRef: HEAD
RemoteSha: 383178a721609e8091ea5e5d0ce4f94d3672dd8c
Packaged: 2026-07-04 12:14:36 UTC; root