To cite package ‘nucleoSim’ in publications use:

  Samb R, Khadraoui K, Belleau P, et al. (2015) Using informative
  Multinomial-Dirichlet prior in a t-mixture with reversible jump
  estimation of nucleosome positions for genome-wide profiling.
  Statistical Applications in Genetics and Molecular Biology. Volume
  14, Issue 6, Pages 517-532, ISSN (Online) 1544-6115, ISSN (Print)
  2194-6302, DOI: 10.1515/sagmb-2014-0098, December 2015

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling},
    author = {Rawane Samb and Khader Khadraoui and Pascal Belleau and Astrid Desch\^enes and Lajmi Lakhal-Chaieb and Arnaud Droit},
    year = {2015},
    journal = {Statistical Applications in Genetics and Molecular Biology},
    volume = {14},
    issue = {6},
    pages = {517–532},
    doi = {10.1515/sagmb-2014-0098},
    url = {http://www.degruyter.com/view/j/sagmb.ahead-of-print/sagmb-2014-0098/sagmb-2014-0098.xml},
  }

  Flores O and Orozco M (2011). “nucleR: a package for non-parametric
  nucleosome positioning.” Bioinformatics, 27, pp. 2149–2150. DOI:
  10.1093/bioinformatics/btr345

A BibTeX entry for LaTeX users is

  @Article{,
    title = {nucleR: a package for non-parametric nucleosome positioning.},
    author = {Oscar Flores and Modesto Orozco},
    year = {2011},
    journal = {Bioinformatics},
    volume = {27},
    issue = {15},
    pages = {2149–2150},
    doi = {10.1093/bioinformatics/btr345},
    url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btr345},
  }