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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "nucleoSim" in publications use:'
type: software
license: Artistic-2.0
title: 'nucleoSim: Generate synthetic nucleosome maps'
version: 1.33.0
doi: 10.1515/sagmb-2014-0098
abstract: 'This package can generate a synthetic map with reads covering the nucleosome
  regions as well as a synthetic map with forward and reverse reads emulating next-generation
  sequencing. The synthetic hybridization data of “Tiling Arrays” can also be generated.
  The user has choice between three different distributions for the read positioning:
  Normal, Student and Uniform. In addition, a visualization tool is provided to explore
  the synthetic nucleosome maps.'
authors:
- family-names: Samb
  given-names: Rawane
  email: rawane.samb.1@ulaval.ca
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749
- family-names: Belleau
  given-names: Pascal
  email: pascal_belleau@hotmail.com
  orcid: https://orcid.org/0000-0002-0802-1071
- family-names: Droit
  given-names: Arnaud
  email: arnaud.droit@crchuq.ulaval.ca
preferred-citation:
  type: article
  title: Using informative Multinomial-Dirichlet prior in a t-mixture with reversible
    jump estimation of nucleosome positions for genome-wide profiling
  authors:
  - family-names: Samb
    given-names: Rawane
    email: rawane.samb.1@ulaval.ca
  - family-names: Khadraoui
    given-names: Khader
  - family-names: Belleau
    given-names: Pascal
    email: pascal_belleau@hotmail.com
    orcid: https://orcid.org/0000-0002-0802-1071
  - family-names: Desch\^enes
    given-names: Astrid
  - family-names: Lakhal-Chaieb
    given-names: Lajmi
  - family-names: Droit
    given-names: Arnaud
    email: arnaud.droit@crchuq.ulaval.ca
  year: '2015'
  journal: Statistical Applications in Genetics and Molecular Biology
  volume: '14'
  issue: '6'
  doi: 10.1515/sagmb-2014-0098
  url: http://www.degruyter.com/view/j/sagmb.ahead-of-print/sagmb-2014-0098/sagmb-2014-0098.xml
  start: 517–532
repository: https://bioc.r-universe.dev
repository-code: https://github.com/arnauddroitlab/nucleoSim
url: https://github.com/arnauddroitlab/nucleoSim
date-released: '2015-07-24'
contact:
- family-names: Deschênes
  given-names: Astrid
  email: adeschen@hotmail.com
  orcid: https://orcid.org/0000-0001-7846-6749
references:
- type: article
  title: 'nucleR: a package for non-parametric nucleosome positioning.'
  authors:
  - family-names: Flores
    given-names: Oscar
  - family-names: Orozco
    given-names: Modesto
  year: '2011'
  journal: Bioinformatics
  volume: '27'
  issue: '15'
  doi: 10.1093/bioinformatics/btr345
  url: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btr345
  start: 2149–2150