Package: nuCpos
Title: An R package for prediction of nucleosome positions
Authors@R: c(person("Hiroaki", "Kato", role=c("aut", "cre"), 
			email="hkato@med.shimane-u.ac.jp"), 
		person("Takeshi", "Urano", role=c("ctb")))
Version: 1.31.0
Description: nuCpos, a derivative of NuPoP, is an R package for
        prediction of nucleosome positions. nuCpos calculates local and
        whole nucleosomal histone binding affinity (HBA) scores for a
        given 147-bp sequence. Note: This package was designed to
        demonstrate the use of chemical maps in prediction. As the
        parental package NuPoP now provides chemical-map-based
        prediction, the function for dHMM-based prediction was removed
        from this package. nuCpos continues to provide functions for
        HBA calculation.
Author: Hiroaki Kato, Takeshi Urano
License: GPL-2
Depends: R (>= 4.2.0)
Imports: graphics, methods
Suggests: NuPoP, Biostrings, testthat
biocViews: Genetics, Epigenetics, NucleosomePositioning
Date: 2023-02-16
NeedsCompilation: yes
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:29 UTC
RemoteUrl: https://github.com/bioc/nuCpos
RemoteRef: HEAD
RemoteSha: fc676dd313a73569f7059e03b25b60e9345b288f
Packaged: 2026-07-16 04:59:35 UTC; root
Maintainer: Hiroaki Kato <hkato@med.shimane-u.ac.jp>