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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "notame" in publications use:'
type: software
license: MIT
title: 'notame: Workflow for non-targeted LC-MS metabolic profiling'
version: 1.3.0
doi: 10.3390/metabo10040135
identifiers:
- type: doi
  value: 10.32614/CRAN.package.notame
abstract: Provides functionality for untargeted LC-MS metabolomics research as specified
  in the associated protocol article in the 'Metabolomics Data Processing and Data
  Analysis—Current Best Practices' special issue of the Metabolites journal (2020).
  This includes tabular data preprocessing and quality control, uni- and multivariate
  analysis as well as quality control visualizations, feature-wise visualizations
  and results visualizations. Raw data preprocessing and functionality related to
  biological context, such as pathway analysis, is not included.
authors:
- family-names: Klåvus
  given-names: Anton
  orcid: https://orcid.org/0000-0003-2612-0230
- family-names: Paananen
  given-names: Jussi
  orcid: https://orcid.org/0000-0001-5100-4907
- family-names: Timonen
  given-names: Oskari
  orcid: https://orcid.org/0000-0002-6317-6260
- family-names: Lihtamo
  given-names: Atte
- family-names: Suksi
  given-names: Vilhelm
  email: vksuks@utu.fi
  orcid: https://orcid.org/0009-0005-1108-518X
- family-names: Haikonen
  given-names: Retu
  orcid: https://orcid.org/0000-0003-0830-3850
- family-names: Lahti
  given-names: Leo
  orcid: https://orcid.org/0000-0001-5537-637X
- family-names: Hanhineva
  given-names: Kati
  orcid: https://orcid.org/0000-0001-6834-7375
preferred-citation:
  type: article
  title: '"notame": Workflow for Non-Targeted LC-MS Metabolic Profiling'
  authors:
  - family-names: Klavus
    given-names: Anton
  - family-names: Kokla
    given-names: Marietta
  - family-names: Noerman
    given-names: Stefania
  - family-names: Koistinen
    given-names: Ville M.
  - family-names: Tuomainen
    given-names: Marjo
  - family-names: Zarei
    given-names: Iman
  - family-names: Meuronen
    given-names: Topi
  - family-names: Hakkinen
    given-names: Merja R.
  - family-names: Rummukainen
    given-names: Soile
  - family-names: Farizah Babu
    given-names: Ambrin
  - family-names: Sallinen
    given-names: Taisa
  - family-names: Karkkainen
    given-names: Olli
  - family-names: Paananen
    given-names: Jussi
    orcid: https://orcid.org/0000-0001-5100-4907
  - family-names: Broadhurst
    given-names: David
  - family-names: Brunius
    given-names: Carl
  - family-names: Hanhineva
    given-names: Kati
    orcid: https://orcid.org/0000-0001-6834-7375
  year: '2020'
  journal: Metabolites
  volume: '10'
  issue: '135'
  url: https://doi.org/10.3390/metabo10040135
  doi: 10.3390/metabo10040135
repository: https://bioc.r-universe.dev
repository-code: https://github.com/hanhineva-lab/notame
commit: d7eaa1a10cbc791a51d28fabd0db77a942682bc1
url: https://hanhineva-lab.github.io/notame/
date-released: '2026-04-28'
contact:
- family-names: Suksi
  given-names: Vilhelm
  email: vksuks@utu.fi
  orcid: https://orcid.org/0009-0005-1108-518X