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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "nipalsMCIA" in publications use:'
type: software
license: GPL-3.0-only
title: 'nipalsMCIA: Multiple Co-Inertia Analysis via the NIPALS Method'
version: 1.3.1
doi: 10.1101/2024.06.07.597819
identifiers:
- type: doi
  value: 10.32614/CRAN.package.nipalsMCIA
abstract: Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction
  (jDR) algorithm, for a multi-block dataset using a modification to the Nonlinear
  Iterative Partial Least Squares method (NIPALS) proposed in (Hanafi et. al, 2010).
  Allows multiple options for row- and table-level preprocessing, and speeds up computation
  of variance explained. Vignettes detail application to bulk- and single cell- multi-omics
  studies.
authors:
- family-names: Mattessich
  given-names: Maximilian
  email: maximilian.mattessich@northwestern.edu
  orcid: https://orcid.org/0000-0002-1233-1240
- family-names: Reyna
  given-names: Joaquin
  email: joreyna@live.com
  orcid: https://orcid.org/0000-0002-8468-2840
- family-names: Aron
  given-names: Edel
  email: edel.aron@yale.edu
  orcid: https://orcid.org/0000-0002-8683-4772
- family-names: Ay
  given-names: Ferhat
  email: ferhatay@lji.org
  orcid: https://orcid.org/0000-0002-0708-6914
- family-names: Kleinstein
  given-names: Steven
  email: steven.kleinstein@yale.edu
  orcid: https://orcid.org/0000-0003-4957-1544
- family-names: Konstorum
  given-names: Anna
  email: konstorum.anna@gmail.com
  orcid: https://orcid.org/0000-0003-4024-2058
preferred-citation:
  type: article
  title: 'nipalsMCIA: Discovering shared and data-specific signals using joint dimensionality
    reduction'
  authors:
  - family-names: Mattessich
    given-names: Max
  - family-names: Reyna
    given-names: Joaquin
    email: joreyna@live.com
    orcid: https://orcid.org/0000-0002-8468-2840
  - family-names: Aron
    given-names: Edel
    email: edel.aron@yale.edu
    orcid: https://orcid.org/0000-0002-8683-4772
  - family-names: Ay
    given-names: Ferhat
    email: ferhatay@lji.org
    orcid: https://orcid.org/0000-0002-0708-6914
  - family-names: Kilmer
    given-names: Misha
  - family-names: Kleinstein
    given-names: Steven
    email: steven.kleinstein@yale.edu
    orcid: https://orcid.org/0000-0003-4957-1544
  - family-names: Konstorum
    given-names: Anna
    email: konstorum.anna@gmail.com
    orcid: https://orcid.org/0000-0003-4024-2058
  year: '2024'
  journal: bioRxiv
  doi: 10.1101/2024.06.07.597819
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Muunraker/nipalsMCIA
commit: c1bf9f2e9810bcd078fdd92145d6b4cc2e134bcb
url: https://github.com/Muunraker/nipalsMCIA
contact:
- family-names: Mattessich
  given-names: Maximilian
  email: maximilian.mattessich@northwestern.edu
  orcid: https://orcid.org/0000-0002-1233-1240