Package: netboost
Type: Package
Title: Network Analysis Supported by Boosting
Version: 2.21.5
Date: 2026-06-29
Authors@R: c(person("Pascal", "Schlosser", role = c("aut", "cre"),
                    email = "pascal.schlosser@uniklinik-freiburg.de",
                    comment = c(ORCID = "0000-0002-8460-0462")),
             person("Jochen", "Knaus", role = c("aut", "ctb"),
                    email = "jo@imbi.uni-freiburg.de"),
             person("Alex", "Waterhölter", role = c("aut", "ctb"),
                    email = "alex.waterhoelter@uniklinik-freiburg.de"))
Description: Boosting-supported network analysis for high-dimensional
        omics data, implementing a three-step dimension reduction
        technique. A filter combined with the topological overlap
        measure first identifies the essential edges of the feature
        network, sparse hierarchical clustering then groups the
        selected features into modules, and each module is finally
        summarised by its first principal components. Subsequent
        analyses are carried out on these low-dimensional module
        signals instead of the original data, which makes the method
        well suited to epigenetics, metabolomics, transcriptomics, and
        other omics studies. The method is described in Schlosser et
        al. (2021) <doi:10.1109/TCBB.2020.2983010>.
Depends: R (>= 4.0.0)
biocViews: Software, StatisticalMethod, GraphAndNetwork, Network,
        Clustering, DimensionReduction, BiomedicalInformatics,
        Epigenetics, Metabolomics, Transcriptomics
Imports: Rcpp, RcppParallel, parallel, grDevices, graphics, stats,
        utils, dynamicTreeCut, WGCNA, impute, colorspace, methods
LinkingTo: Rcpp, RcppParallel
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
ByteCompile: yes
NeedsCompilation: yes
LazyData: true
License: GPL-3
URL: https://bioconductor.org/packages/release/bioc/html/netboost.html
BugReports: mailto:pascal.schlosser@uniklinik-freiburg.de
Contact: pascal.schlosser@uniklinik-freiburg.de
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-30 06:43:27 UTC
RemoteUrl: https://github.com/bioc/netboost
RemoteRef: HEAD
RemoteSha: 5d6db47e075f5e97d913a290052c1e4b76be90aa
Packaged: 2026-06-30 13:14:58 UTC; root
Author: Pascal Schlosser [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8460-0462>),
  Jochen Knaus [aut, ctb],
  Alex Waterhölter [aut, ctb]
Maintainer: Pascal Schlosser <pascal.schlosser@uniklinik-freiburg.de>