# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "netDx" in publications use:'
type: software
license: MIT
title: 'netDx: Network-based patient classifier'
version: 1.17.0
doi: 10.15252/msb.20188497
abstract: 'netDx is a general-purpose algorithm to build a patient classifier from
  heterogenous patient data. The method converts data into patient similarity networks
  at the level of features. Feature selection identifies features of predictive value
  to each class. Methods are provided for versatile predictor design and performance
  evaluation using standard measures. netDx natively groups molecular data into pathway-level
  features and connects with Cytoscape for network visualization of pathway themes.
  For method details see: Pai et al. (2019). netDx: interpretable patient classification
  using integrated patient similarity networks. Molecular Systems Biology. 15, e8497'
authors:
- family-names: Pai
  given-names: Shraddha
  email: shraddha.pai@utoronto.ca
  orcid: https://orcid.org/0000-0002-1048-581X
- family-names: Weber
  given-names: Philipp
- family-names: Shah
  given-names: Ahmad
- family-names: Giudice
  given-names: Luca
- family-names: Hui
  given-names: Shirley
- family-names: Isserlin
  given-names: Ruth
- family-names: Kaka
  given-names: Hussam
- family-names: Bader
  given-names: Gary
preferred-citation:
  type: article
  title: 'netDx: interpretable patient classification using integrated patient similarity
    networks'
  authors:
  - family-names: Pai
    given-names: Shraddha
    email: shraddha.pai@utoronto.ca
    orcid: https://orcid.org/0000-0002-1048-581X
  - family-names: Hui
    given-names: Shirley
  - family-names: Isserlin
    given-names: Ruth
  - family-names: Shah
    given-names: Muhammad A
  - family-names: Kaka
    given-names: Hussam
  - family-names: Bader
    given-names: Gary D.
  year: '2019'
  journal: Molecular Systems Biology
  volume: '15'
  doi: 10.15252/msb.20188497
  start: e8497
repository: https://bioc.r-universe.dev
url: http://netdx.org
contact:
- family-names: Pai
  given-names: Shraddha
  email: shraddha.pai@utoronto.ca
  orcid: https://orcid.org/0000-0002-1048-581X
references:
- type: article
  title: 'netDx: Software for building interpretable patient classifiers by multi-''omic
    data integration using patient similarity networks'
  authors:
  - family-names: Pai
    given-names: Shraddha
  - family-names: Weber
    given-names: Philipp
  - family-names: Isserlin
    given-names: Ruth
  - family-names: Kaka
    given-names: Hussam
  - family-names: Hui
    given-names: Shirley
  - family-names: Shah
    given-names: Muhammad A
  - family-names: Giudice
    given-names: Luca
  - family-names: Giugno
    given-names: Rosalba
  - family-names: Nøhr
    given-names: Anne Krogh
  - family-names: Baumbach
    given-names: Jan
  - family-names: Bader
    given-names: Gary D.
  year: '2021'
  journal: F1000Research
  volume: '9'
  doi: 10.12688/f1000research.26429.2
  start: '1239'