NEWS

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netDx 1.5.3

• Moved RCy3, scater, clusterExperiment and netSmooth to "Suggests" to reduce dependency burden
• Sped up vignettes by limiting all to binary classification and limiting number of layers
• Removed TL;DR from vignettes as usefulness in question but maintainance high. Developers notes:
• Added Dockerfile and Github Actions for automated testing
• GHA auto-generates a Docker image with netDx which gets pushed to shraddhapai/netdx_devenv

netDx 1.5.2

• Added wrapper functions for ease-of-use. Includes:
• getResults() to plot results of running the predictor
• getPSN() for creating and visualizing integrated PSN
• confusionMatrix() to visualize confusion matrix
• tSNEPlotter() to visualize tSNE of integrated PSN (doesn't require Cytoscape)
• Added CITATION file with citations to netDx methods and software paper

netDx 1.5.1

• Adding support for Java 16.
• Disabling CNV-based vignette to allow other three vignettes to run without causing build timeout on devel system

netDx 1.1.4

Changes

• New functionality to smooth mutations over interaction, starting from sparse

somatic mutations

• BiocFileCache usage update

netDx 0.99.0 (2019-11-11)

• Submitted to Bioconductor