# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "nempi" in publications use:'
type: software
license: GPL-3.0-only
title: 'nempi: Inferring unobserved perturbations from gene expression data'
version: 1.13.0
abstract: Takes as input an incomplete perturbation profile and differential gene
  expression in log odds and infers unobserved perturbations and augments observed
  ones. The inference is done by iteratively inferring a network from the perturbations
  and inferring perturbations from the network. The network inference is done by Nested
  Effects Models.
authors:
- family-names: Pirkl
  given-names: Martin
  email: martinpirkl@yahoo.de
preferred-citation:
  type: article
  title: Inferring perturbation profiles of cancer samples.
  authors:
  - family-names: Pirkl
    given-names: Martin
    email: martinpirkl@yahoo.de
  - family-names: Beerenwinkel
    given-names: Niko
  journal: Bioinformatics
  year: '2021'
  issue: btab113
  url: https://doi.org/10.1093/bioinformatics/btab113
repository: https://bioc.r-universe.dev
repository-code: https://github.com/cbg-ethz/nempi
url: https://github.com/cbg-ethz/nempi/
contact:
- family-names: Pirkl
  given-names: Martin
  email: martinpirkl@yahoo.de