NEWS

---

nearBynding 1.3.3

Changes

• update description to accommodate changes in knitr/rmarkdown packages
• update dummy data files to new format so vignette can run

nearBynding 1.3.1

Changes

• include ability to iteratively acquire and visualize Bkg std error
• new arguments to choose whether to calculate Bkg std error
• accomodate StereoGene version 2.22, esp. seeding of analysis
• better run analysis on track files outside local directory

nearBynding 1.1.4

Changes

• remove variable assignment bugs from symmetryContext

nearBynding 0.99.13

Changes

• edit bindingContextDistanceCapR to properly accommodate range limitations in calculations
• edit bindingContextDistance to properly accommodate range limitations in calculations
• add symmetryCapR and symmetryContext functions to determine binding context symmetry about the site of protein binding
• edit visualizeStereogene and visualizeCapRStereogene so that the x axis says 'Nucleotide' rather than 'Distance' and so that the user may manipulate the number of standard deviations are illustrated by the error bars

nearBynding 0.99.12

Changes

• re-generate NAMESPACE via Roxygen
• clarify man pages
• incorporate runnable examples in man pages and vignette
• add catches to functions if software is unavailable