Package: mzR Type: Package Title: parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data) Version: 2.47.0 Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer Authors@R: c( person("Steffen", "Neumann", email="sneumann@ipb-halle.de", role=c("aut","cre")), person("Laurent", "Gatto", email="laurent.gatto@uclouvain.be", role=c("aut")), person("Qiakng", "Kou", email="qkou@umail.iu.edu", role=c("aut")), person("David","Rauh",email="drauh@ipb-halle.de", role=c("ctb")), person("Sascha","Manier",email="sascha.manier@uni-saarland.de", role=c("ctb")), person(given = "Adriano", family = "Rutz", email = "adafede@gmail.com", role = c("ctb"), comment = c(ORCID = "0000-0003-0443-9902")), person(given = "Johannes", family = "Rainer", email = "Johannes.Rainer@eurac.edu", role = "aut", comment = c(ORCID = "0000-0002-6977-7147")) ) Description: mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS. License: Artistic-2.0 LazyLoad: yes Depends: R (>= 4.0.0), Rcpp (>= 0.10.1), methods, utils Imports: Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3), ncdf4 Suggests: MsDataHub, RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML, rmarkdown VignetteBuilder: knitr LinkingTo: Rcpp, Rhdf5lib (>= 1.1.4) RcppModules: Pwiz, Ident SystemRequirements: C++11, GNU make URL: https://github.com/sneumann/mzR/ BugReports: https://github.com/sneumann/mzR/issues/ biocViews: ImmunoOncology, Infrastructure, DataImport, Proteomics, Metabolomics, MassSpectrometry RoxygenNote: 7.3.3 Config/pak/sysreqs: make libnetcdf-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:35:42 UTC RemoteUrl: https://github.com/bioc/mzR RemoteRef: HEAD RemoteSha: a438fe81b9348d58d340cdba4585bb8a99dede39 NeedsCompilation: yes Packaged: 2026-06-23 15:19:16 UTC; root Maintainer: Steffen Neumann