NEWS

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musicatk 2.2.1 (2025-07-15)

• Removed conclust dependency
• Fixed plotting issues with indels
• Cosmetic changes to k value and plotting code

musicatk 2.2.0 (2025-04-15)

• Updated version number to match Bioconductor

musicatk 2.0.0 (2024-10-30)

• Restructure of the musica class to contain mutational signature discovery and prediction results, thus eliminating the need for the musica_result class.
• Added new functionality to help determine the correct number of signatures to predict (k-value).
• Musica objects can be created from variants or directly from count tables.

musicatk 1.14.1 (2024-07-13)

• Removed deconstructSigs

musicatk 1.14.0 (2024-05-03)

• Updated version number to match Bioconductor
• Fixed some minor bugs and dependencies

musicatk 1.10.0 (2023-10-16)

• Updated version number to match Bioconductor

musicatk 1.8.0 (2023-04-11)

• Updated version number to match Bioconductor

musicatk 1.3.1 (2021-10-10)

• Updated version number to match Bioconductor

musicatk 1.2.1 (2021-08-08)

• Fixed bug in fonts for some plots
• Added documentation site generated with pkgdown
• Added Shiny UI for interactive analysis of mutational signatures

musicatk 1.2.0 (2021-08-08)

• Generated new release for Bioconductor 3.13

musicatk 1.1.2 (2021-02-03)

• Added new functionality for analysis including clustering sample exposures using a variety of methods (e.g. k-means), differential exposure using a variety of methods (e.g., Wilcoxon rank-sum, Kruskal Wallis, GLM), and heatmap creation. Fixed a bug causing incorrect counting of mutations during creation of indel tables.