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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "multtest" in publications use:'
type: software
license: LGPL-2.0-only
title: 'multtest: Resampling-based multiple hypothesis testing'
version: 2.61.0
abstract: Non-parametric bootstrap and permutation resampling-based multiple testing
  procedures (including empirical Bayes methods) for controlling the family-wise error
  rate (FWER), generalized family-wise error rate (gFWER), tail probability of the
  proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices
  of bootstrap-based null distribution are implemented (centered, centered and scaled,
  quantile-transformed). Single-step and step-wise methods are available. Tests based
  on a variety of t- and F-statistics (including t-statistics based on regression
  parameters from linear and survival models as well as those based on correlation
  parameters) are included. When probing hypotheses with t-statistics, users may also
  select a potentially faster null distribution which is multivariate normal with
  mean zero and variance covariance matrix derived from the vector influence function.
  Results are reported in terms of adjusted p-values, confidence regions and test
  statistic cutoffs. The procedures are directly applicable to identifying differentially
  expressed genes in DNA microarray experiments.
authors:
- family-names: Pollard
  given-names: Katherine S.
  email: katherine.pollard@gladstone.ucsf.edu
- family-names: Pollard
  given-names: Katherine S.
- family-names: Gilbert
  given-names: Houston N.
- family-names: Ge
  given-names: Yongchao
- family-names: Taylor
  given-names: Sandra
- family-names: Dudoit
  given-names: Sandrine
preferred-citation:
  type: book
  title: 'Multiple Testing Procedures: R multtest Package and Applications to Genomics,
    in Bioinformatics and Computational Biology Solutions Using R and Bioconductor'
  authors:
  - family-names: Pollard
    given-names: Katherine S.
    email: katherine.pollard@gladstone.ucsf.edu
  - family-names: Dudoit
    given-names: Sandrine
  - family-names: Laan
    given-names: Mark J.
    name-particle: van der
  year: '2005'
  publisher:
    name: Springer
repository: https://bioc.r-universe.dev
contact:
- family-names: Pollard
  given-names: Katherine S.
  email: katherine.pollard@gladstone.ucsf.edu