Package: multistateQTL
Type: Package
Date: 2025-03-07
Title: Toolkit for the analysis of multi-state QTL data
Version: 2.5.0
Authors@R: c(
    person("Christina", "Del Azodi", role=c("aut"), email="cazodi@svi.edu.au"), 
    person("Davis","McCarthy", role=c("ctb"), email="dmccarthy@svi.edu.au"),
    person("Amelia","Dunstone", role=c("cre", "aut"), email="amelia.dunstone@svi.edu.au", comment=c(ORCID="0009-0009-6426-1529")))
Description: A collection of tools for doing various analyses of
        multi-state QTL data, with a focus on visualization and
        interpretation. The package 'multistateQTL' contains functions
        which can remove or impute missing data, identify significant
        associations, as well as categorise features into global,
        multi-state or unique. The analysis results are stored in a
        'QTLExperiment' object, which is based on the
        'SummarisedExperiment' framework.
License: GPL-3
URL: https://github.com/dunstone-a/multistateQTL
BugReports: https://github.com/dunstone-a/multistateQTL/issues
Encoding: UTF-8
Depends: QTLExperiment, SummarizedExperiment, ComplexHeatmap, collapse
Imports: methods, S4Vectors, data.table, grid, dplyr, tidyr,
        matrixStats, stats, fitdistrplus, viridis, ggplot2, circlize,
        mashr, grDevices
Suggests: testthat, BiocStyle, knitr, covr, rmarkdown
biocViews: FunctionalGenomics, GeneExpression, Sequencing,
        Visualization, SNP, Software
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev libpng-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-06 05:33:00 UTC
RemoteUrl: https://github.com/bioc/multistateQTL
RemoteRef: HEAD
RemoteSha: 1070219c1dde896897e3d5880bbed8683f033602
NeedsCompilation: no
Packaged: 2026-07-05 06:01:01 UTC; root
Author: Christina Del Azodi [aut],
  Davis McCarthy [ctb],
  Amelia Dunstone [cre, aut] (ORCID:
    <https://orcid.org/0009-0009-6426-1529>)
Maintainer: Amelia Dunstone <amelia.dunstone@svi.edu.au>