Package: multipointR
Title: A package to compare intensities of point patterns across
        samples with spatial parametric models
Version: 0.99.6
Authors@R: c( 
    person("Martin", "Emons", , "martin.emons@uzh.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0000-5219-5311")),
    person("Wolfgang", "Huber", , role="aut",
            comment = c(ORCID = "0000-0002-0474-2218")),
    person("Mark D.", "Robinson", , "mark.robinson@mls.uzh.ch", role = c("aut", "fnd"),
           comment = c(ORCID = "0000-0002-3048-5518")))
Description: `multipointR` is a package to compare the distribution of
        cells in an image or cross images with point process models. On
        a single image level point process models (`ppm`) model the
        spatial distribution of a cell type point pattern as a function
        of spatial covariates while accounting for natural spacing of
        cells. The main model class considered in `multipointR` are
        inhomgoeneous Gibb's point process models. Across multiple
        images, users can either compare multiple univariate `ppm`
        models in a for loop or fit one joint model across all images
        with `mppm`. `multipointR` provides an interface between
        `SpatialExperiment` and `SpatialFeatureExperiment` objects and
        let's users flexibly define their own `ppm`/`mppm` models with
        R's formula interface.
License: GPL (>= 3)
URL: https://github.com/mjemons/multipointR
BugReports: https://github.com/mjemons/multipointR/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: SummarizedExperiment, methods, SpatialExperiment,
        spatstat.geom, spatstat.model, spatstat.explore, formula.tools,
        mgcv, dplyr, ggplot2, reformulas, S4Vectors, rlang
biocViews: Software, Spatial, Transcriptomics, SingleCell
Suggests: knitr, BiocStyle, patchwork, SpatialFeatureExperiment,
        rmarkdown, SpatialDatasets, sosta, glmnet, testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: R (>= 4.1.0)
VignetteBuilder: knitr
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-26 14:28:29 UTC
RemoteUrl: https://github.com/bioc/multipointR
RemoteRef: HEAD
RemoteSha: 2af89138ec317c161d5d0df885016bf63dd2287b
NeedsCompilation: no
Packaged: 2026-09-25 12:11:59 UTC; root
Author: Martin Emons [aut, cre] (ORCID:
    <https://orcid.org/0009-0000-5219-5311>),
  Wolfgang Huber [aut] (ORCID: <https://orcid.org/0000-0002-0474-2218>),
  Mark D. Robinson [aut, fnd] (ORCID:
    <https://orcid.org/0000-0002-3048-5518>)
Maintainer: Martin Emons <martin.emons@uzh.ch>