To cite package 'multiHiCcompare', please, use:

  Stansfield, John C, Kellen G Cresswell, and Mikhail G Dozmorov.
  MultiHiCcompare: Joint Normalization and Comparative Analysis of
  Complex Hi-C Experiments. Bioinformatics, January 22, 2019.
  https://doi.org/10.1093/bioinformatics/btz048

A BibTeX entry for LaTeX users is

  @Article{,
    title = {multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments},
    author = {John C. Stansfield and Kellen G. Cresswell and Mikhail G. Dozmorov},
    journal = {Bioinformatics},
    year = {2019},
    volume = {35},
    number = {17},
    month = {Sep},
    url = {https://github.com/dozmorovlab/multiHiCcompare},
    doi = {10.1093/bioinformatics/btz048},
  }