NEWS

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multiHiCcompare 1.13.0 (2022-04-21)

• Match NEWS and DESCRIPTION versioning

multiHiCcompare 1.12.0 (2020-11-23)

• Update selection of significant results in the 'topDirs' function. Major change, results will be more strict compared to pre-2.0.0 version
• Removed 'BLMA' and 'metap' dependency, added 'aggregation' dependency
• P-values are aggregated using 'max' by default. I.e., for a region differentially interacting with multiple regions, a maximum p-value will be selected. Fisher, Lancaster, and Sidak methods are also available
• Harmonize counting of significant regions using 'p.adj_cutoff' only ('alpha' cutoff removed)
• The 'manhattan' function is harmonized with 'topDirs'
• The 'perm_test' function is harmonized with 'topDirs'
• Update vignettes to match functions

multiHiCcompare 1.7.1 (2020-08-28)

• Track NEWS
• Bump version
• Update R version dependency from 3.5.0 to 4.0
• Add exported objects to NAMESPACE that caused BiocCheck error
• Add CITATION, also to README.md file
• Update DESCRIPTION o Add Mikhail Dozmorov as Maintainer o Add URL and BugReports fields