Package: mspms
Type: Package
Title: Tools for the analysis of MSP-MS data
Version: 1.5.0
Authors@R: person("Charlie", "Bayne", email = "baynec2@gmail.com",
    role = c("aut", "cre"),comment=c(ORCID="0000-0003-1870-5298"))
Description: This package provides functions for the analysis of data
        generated by the multiplex substrate profiling by mass
        spectrometry for proteases (MSP-MS) method. Data exported from
        upstream proteomics software is accepted as input and
        subsequently processed for analysis. Tools for statistical
        analysis, visualization, and interpretation of the data are
        provided.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.4.0)
biocViews: Proteomics, MassSpectrometry, Preprocessing
LazyData: true
Imports: QFeatures, limma, SummarizedExperiment, magrittr, rlang,
        dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo,
        heatmaply, readr, rstatix, tibble, ggpubr, imputeLCMD
Suggests: knitr, testthat (>= 3.0.0), downloadthis, DT, rmarkdown,
        BiocStyle
Config/testthat/edition: 3
URL: https://github.com/baynec2/mspms
BugReports: https://github.com/baynec2/mspms/issues
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libuv1-dev libxml2-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:04:02 UTC
RemoteUrl: https://github.com/bioc/mspms
RemoteRef: HEAD
RemoteSha: e9f2f9604c2e003b18b9cc1e2379856400c8ca2a
NeedsCompilation: no
Packaged: 2026-07-11 05:15:44 UTC; root
Author: Charlie Bayne [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1870-5298>)
Maintainer: Charlie Bayne <baynec2@gmail.com>