Package: msigdb
Title: An ExperimentHub Package for the Molecular Signatures Database
        (MSigDB)
Version: 1.21.0
Authors@R: c(
            person(given = "Dharmesh D.",
                   family = "Bhuva",
                   role = c("aut", "cre"),
                   email = "bhuva.d@wehi.edu.au",
                   comment = c(ORCID = "0000-0002-6398-9157")),
            person(given = "Gordon K.",
                   family = "Smyth",
                   role = c("aut"),
                   comment = c(ORCID = "0000-0001-9221-2892")),
            person(given = "Alexandra",
                   family = "Garnham",
                   role = c("aut"),
                   comment = c(ORCID = "0000-0002-8312-8450"))
            )
Description: This package provides the Molecular Signatures Database
        (MSigDB) in a R accessible objects. Signatures are stored in
        GeneSet class objects form the GSEABase package and the entire
        database is stored in a GeneSetCollection object. These data
        are then hosted on the ExperimentHub. Data used in this package
        was obtained from the MSigDB of the Broad Institute. Metadata
        for each gene set is stored along with the gene set in the
        GeneSet class object.
biocViews: ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data
License: CC BY 4.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.1)
Imports: ExperimentHub, utils, GSEABase, org.Mm.eg.db, org.Hs.eg.db,
        AnnotationDbi, methods, stats, AnnotationHub
Suggests: singscore, vissE, knitr, prettydoc, BiocStyle, rmarkdown,
        testthat (>= 3.0.0), BiocFileCache, GO.db, stringr, limma
URL: https://davislaboratory.github.io/msigdb
BugReports: https://github.com/DavisLaboratory/msigdb/issues
NeedsCompilation: no
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:19 UTC
RemoteUrl: https://github.com/bioc/msigdb
RemoteRef: HEAD
RemoteSha: 1c15606f5051af0a7f576814d7cbe3fedd272a7d
Packaged: 2026-10-14 11:54:00 UTC; root
Author: Dharmesh D. Bhuva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6398-9157>),
  Gordon K. Smyth [aut] (ORCID: <https://orcid.org/0000-0001-9221-2892>),
  Alexandra Garnham [aut] (ORCID:
    <https://orcid.org/0000-0002-8312-8450>)
Maintainer: Dharmesh D. Bhuva <bhuva.d@wehi.edu.au>