Package: motifmatchr
Type: Package
Title: Fast Motif Matching in R
Version: 1.35.0
Date: 2025-07-22
Authors@R: c( person("Alicia", "Schep", email = "aschep@gmail.com",
        role = c("aut","cre")), person("Stanford University", role =
        "cph"))
Maintainer: Alicia Schep <aschep@gmail.com>
Description: Quickly find motif matches for many motifs and many
        sequences. Wraps C++ code from the MOODS motif calling library,
        which was developed by Pasi Rastas, Janne Korhonen, and Petri
        Martinmäki.
License: GPL-3 + file LICENSE
Imports: Matrix, Rcpp, methods, TFBSTools, Biostrings, BSgenome,
        S4Vectors, SummarizedExperiment, GenomicRanges, IRanges,
        Rsamtools, Seqinfo
Depends: R (>= 3.3)
Suggests: testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
biocViews: MotifAnnotation
LinkingTo: Rcpp, RcppArmadillo
SystemRequirements: C++11
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Encoding: UTF-8
Config/pak/sysreqs: make libgsl0-dev libbz2-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:46 UTC
RemoteUrl: https://github.com/bioc/motifmatchr
RemoteRef: HEAD
RemoteSha: 0aa3d5188fd7c600a4a2fd801724ff57aa162a72
NeedsCompilation: yes
Packaged: 2026-06-23 15:42:56 UTC; root
Author: Alicia Schep [aut, cre],
  Stanford University [cph]