NEWS
motifcounter 1.5.4
- Accept DNAString wherever DNAStringSet
was accepted.
motifcounter 1.5.3
- Fast motif matching
Various improvements to improve
motif matching speed were implemented.
1. Precomputed position weights
to avoid the invokation of the log function
during scanning. 2. threshold argument
added to avoid having to determine the score
distribution for each sequence individually.
3. Stop as soon as the motif score cannot
or is certainly exceeding the threshold.
motifcounter 1.5.2
- scoreSequence,
scoreHistogram, scoreProfile
motifHits, motifHitProfile can
be used with N-containing sequences.
Positions at which the motif overlaps
with N's will be NaN.
- Background can be computed from
a DNAString in addition to a DNAStringSet
object.
motifcounter 1.5.1
- Background can be computed with
sequences that contain N's.
motifcounter 1.3.2
- Changed contact information
motifcounter 1.1.9
- Removed compiler warnings
- Changes to the vignette
motifcounter 1.1.8
- Internal refactoring
- Changed citation information
motifcounter 0.99.0
- Inital Bioconductor Submission