Package: motifTestR
Title: Perform key tests for binding motifs in sequence data
Version: 1.9.0
Authors@R: person("Stevie", "Pederson", 
  email = "stephen.pederson.au@gmail.com", 
  role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-8197-3303")
  )
Description: Taking a set of sequence motifs as PWMs, test a set of
        sequences for over-representation of these motifs, as well as
        any positional features within the set of motifs. Enrichment
        analysis can be undertaken using multiple statistical
        approaches. The package also contains core functions to prepare
        data for analysis, and to visualise results.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/smped/motifTestR
BugReports: https://github.com/smped/motifTestR/issues
Depends: Biostrings, GenomicRanges, ggplot2 (>= 4.0.0), R (>= 4.5.0),
Imports: Seqinfo, graphics, harmonicmeanp, IRanges, matrixStats,
        methods, parallel, patchwork, rlang, S4Vectors, stats,
        universalmotif,
Suggests: AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
        extraChIPs (>= 1.13.3), ggdendro, knitr, MASS, MotifDb,
        rmarkdown, rtracklayer, SimpleUpset, testthat (>= 3.0.0), VGAM
biocViews: MotifAnnotation, ChIPSeq, ChipOnChip, SequenceMatching,
        Software
LazyData: false
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:41 UTC
RemoteUrl: https://github.com/bioc/motifTestR
RemoteRef: HEAD
RemoteSha: ee8914c9e31ca8a8a8fbbb7e595913c06e0ecb0f
NeedsCompilation: no
Packaged: 2026-07-03 14:05:36 UTC; root
Author: Stevie Pederson [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8197-3303>)
Maintainer: Stevie Pederson <stephen.pederson.au@gmail.com>