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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "mosbi" in publications use:'
type: software
license: AGPL-3.0-only
title: 'mosbi: Molecular Signature identification using Biclustering'
version: 1.11.0
abstract: This package is a implementation of biclustering ensemble method MoSBi (Molecular
  signature Identification from Biclustering). MoSBi provides standardized interfaces
  for biclustering results and can combine their results with a multi-algorithm ensemble
  approach to compute robust ensemble biclusters on molecular omics data. This is
  done by computing similarity networks of biclusters and filtering for overlaps using
  a custom error model. After that, the louvain modularity it used to extract bicluster
  communities from the similarity network, which can then be converted to ensemble
  biclusters. Additionally, MoSBi includes several network visualization methods to
  give an intuitive and scalable overview of the results. MoSBi comes with several
  biclustering algorithms, but can be easily extended to new biclustering algorithms.
authors:
- family-names: Rose
  given-names: Tim Daniel
  email: tim.rose@wzw.tum.de
- family-names: Pauling
  given-names: Josch Konstantin
  email: josch.pauling@tum.de
- family-names: Koehler
  given-names: Nikolai
  email: nikolai.koehler@tum.de
preferred-citation:
  type: article
  title: 'MoSBi: Automated signature mining for molecular stratification and subtyping'
  authors:
  - family-names: Rose
    given-names: Tim Daniel
    email: tim.rose@wzw.tum.de
  - family-names: Bechtler
    given-names: Thibault
  - family-names: Ciora
    given-names: Octavia-Andreea
  - family-names: Lilian Le
    given-names: Kim Anh
  - family-names: Molnar
    given-names: Florian
  - family-names: Koehler
    given-names: Nikolai
    email: nikolai.koehler@tum.de
  - family-names: Baumbach
    given-names: Jan
  - family-names: Roettger
    given-names: Richard
  - family-names: Pauling
    given-names: Josch Konstantin
    email: josch.pauling@tum.de
  journal: Proceedings of the National Academy of Sciences
  year: '2022'
  volume: '119'
  issue: '16'
  url: https://doi.org/10.1073/pnas.2118210119
  start: e2118210119
repository: https://bioc.r-universe.dev
contact:
- family-names: Rose
  given-names: Tim Daniel
  email: tim.rose@wzw.tum.de